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» The Inference Based on Molecular Computing
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COMPGEOM
2005
ACM
13 years 11 months ago
Dynamic maintenance of molecular surfaces under conformational changes
We present an efficient algorithm for maintaining the boundary and surface area of protein molecules as they undergo conformational changes. We also describe a robust implementati...
Eran Eyal, Dan Halperin
IPPS
2000
IEEE
14 years 2 months ago
Take Advantage of the Computing Power of DNA Computers
Ever since Adleman [1] solved the Hamilton Path problem using a combinatorial molecular method, many other hard computational problems have been investigated with the proposed DNA ...
Zhiquan Frank Qiu, Mi Lu
GRID
2007
Springer
14 years 4 months ago
Integrating multi-level molecular simulations across heterogeneous resources
— Biomolecular simulations play a key role in the study of complex biological processes at microscopic levels in which macromolecules such as proteins are involved. The simulatio...
Yudong Sun, Steve McKeever, Kia Balali-Mood, Mark ...
IRREGULAR
1998
Springer
14 years 2 months ago
Modeling Dynamic Load Balancing in Molecular Dynamics to Achieve Scalable Parallel Execution
To achieve scalable parallel performance in Molecular Dynamics Simulation, we have modeled and implemented several dynamic spatial domain decomposition algorithms. The modeling is ...
Lars S. Nyland, Jan Prins, Ru Huai Yun, Jan Herman...
FCCM
2004
IEEE
143views VLSI» more  FCCM 2004»
14 years 1 months ago
Reconfigurable Molecular Dynamics Simulator
Current high-performance applications are typically implemented on large-scale general-purpose distributed or multiprocessing systems often based on commodity microprocessors. Fie...
Navid Azizi, Ian Kuon, Aaron Egier, Ahmad Darabiha...