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MEMBRANE
2009
Springer
14 years 4 months ago
Computational Nature of Processes Induced by Biochemical Reactions
evel of abstraction that we adopt, the functioning of a biochemical reaction is based on facilitation and inhibition: a reaction can take place if all of its reactants are present ...
Andrzej Ehrenfeucht, Grzegorz Rozenberg
ARC
2007
Springer
140views Hardware» more  ARC 2007»
14 years 1 months ago
Reconfigurable Computing for Accelerating Protein Folding Simulations
Abstract. This paper presents a methodology for the design of a reconfigurable computing system applied to a complex problem in molecular Biology: the protein folding problem. An e...
Nilton B. Armstrong, Heitor S. Lopes, Carlos R. Er...
TITB
2002
142views more  TITB 2002»
13 years 9 months ago
Building a bioinformatics ontology using OIL
This paper describes the initial stages of building an ontology of bioinformatics and molecular biology. The conceptualisation is encoded using the Ontology Inference Layer (OIL),...
Robert Stevens, Carole A. Goble, Ian Horrocks, Sea...
CIE
2006
Springer
14 years 1 months ago
Deep Inference and Its Normal Form of Derivations
Abstract. We see a notion of normal derivation for the calculus of structures, which is based on a factorisation of derivations and which is more general than the traditional notio...
Kai Brünnler
CPM
2005
Springer
97views Combinatorics» more  CPM 2005»
14 years 3 months ago
On the Complexity of Sparse Exon Assembly
Gene structure prediction is one of the most important problems in computational molecular biology. It involves two steps: the first is finding the evidence (e.g. predicting spl...
Carmel Kent, Gad M. Landau, Michal Ziv-Ukelson