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CORR
2011
Springer
188views Education» more  CORR 2011»
13 years 5 months ago
Information-Theoretic Viewpoints on Optimal Causal Coding-Decoding Problems
—In this paper we consider an interacting two-agent sequential decision-making problem consisting of a Markov source process, a causal encoder with feedback, and a causal decoder...
Siva K. Gorantla, Todd P. Coleman
JCB
2007
144views more  JCB 2007»
13 years 10 months ago
Statistical Estimation of Statistical Mechanical Models: Helix-Coil Theory and Peptide Helicity Prediction
Analysis of biopolymer sequences and structures generally adopts one of two approaches: use of detailed biophysical theoretical models of the system with experimentally-determined...
Scott C. Schmidler, Joseph E. Lucas, Terrence G. O...
ICDAR
2007
IEEE
14 years 4 months ago
Energy-Based Models in Document Recognition and Computer Vision
The Machine Learning and Pattern Recognition communities are facing two challenges: solving the normalization problem, and solving the deep learning problem. The normalization pro...
Yann LeCun, Sumit Chopra, Marc'Aurelio Ranzato, Fu...
BMCBI
2005
89views more  BMCBI 2005»
13 years 10 months ago
An empirical analysis of training protocols for probabilistic gene finders
Background: Generalized hidden Markov models (GHMMs) appear to be approaching acceptance as a de facto standard for state-of-the-art ab initio gene finding, as evidenced by the re...
William H. Majoros, Steven Salzberg
JCB
2002
116views more  JCB 2002»
13 years 9 months ago
A Novel Approach to Remote Homology Detection: Jumping Alignments
We describe a new algorithm for protein classi cation and the detection of remote homologs. The rationale is to exploit both vertical and horizontal information of a multiple alig...
Rainer Spang, Marc Rehmsmeier, Jens Stoye