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CORR
2011
Springer
188views Education» more  CORR 2011»
14 years 11 months ago
Information-Theoretic Viewpoints on Optimal Causal Coding-Decoding Problems
—In this paper we consider an interacting two-agent sequential decision-making problem consisting of a Markov source process, a causal encoder with feedback, and a causal decoder...
Siva K. Gorantla, Todd P. Coleman
JCB
2007
144views more  JCB 2007»
15 years 4 months ago
Statistical Estimation of Statistical Mechanical Models: Helix-Coil Theory and Peptide Helicity Prediction
Analysis of biopolymer sequences and structures generally adopts one of two approaches: use of detailed biophysical theoretical models of the system with experimentally-determined...
Scott C. Schmidler, Joseph E. Lucas, Terrence G. O...
ICDAR
2007
IEEE
15 years 10 months ago
Energy-Based Models in Document Recognition and Computer Vision
The Machine Learning and Pattern Recognition communities are facing two challenges: solving the normalization problem, and solving the deep learning problem. The normalization pro...
Yann LeCun, Sumit Chopra, Marc'Aurelio Ranzato, Fu...
BMCBI
2005
89views more  BMCBI 2005»
15 years 4 months ago
An empirical analysis of training protocols for probabilistic gene finders
Background: Generalized hidden Markov models (GHMMs) appear to be approaching acceptance as a de facto standard for state-of-the-art ab initio gene finding, as evidenced by the re...
William H. Majoros, Steven Salzberg
JCB
2002
116views more  JCB 2002»
15 years 3 months ago
A Novel Approach to Remote Homology Detection: Jumping Alignments
We describe a new algorithm for protein classi cation and the detection of remote homologs. The rationale is to exploit both vertical and horizontal information of a multiple alig...
Rainer Spang, Marc Rehmsmeier, Jens Stoye