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DNA
2007
Springer
159views Bioinformatics» more  DNA 2007»
14 years 2 months ago
Activatable Tiles: Compact, Robust Programmable Assembly and Other Applications
While algorithmic DNA self-assembly is, in theory, capable of forming complex patterns, its experimental demonstration has been limited by significant assembly errors. In this pa...
Urmi Majumder, Thomas H. LaBean, John H. Reif
GECCO
2008
Springer
158views Optimization» more  GECCO 2008»
13 years 9 months ago
Structure and parameter estimation for cell systems biology models
In this work we present a new methodology for structure and parameter estimation in cell systems biology modelling. Our modelling framework is based on P systems, an unconl comput...
Francisco José Romero-Campero, Hongqing Cao...
BIBE
2007
IEEE
149views Bioinformatics» more  BIBE 2007»
14 years 16 days ago
XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes
Multi-state molecules and multi-component complexes are commonly involved in cellular signaling. Accounting for molecules that have multiple potential states, such as a protein tha...
Michael L. Blinov, Ion I. Moraru
APPML
2007
45views more  APPML 2007»
13 years 8 months ago
Turing pattern outside of the Turing domain
There are two simple solutions to reaction-diffusion systems with limit-cycle reaction kinetics, producing oscillatory behaviour. The reaction parameter µ gives rise to a ‘spa...
E. H. Flach, Santiago Schnell, John Norbury
ICCMS
2009
118views more  ICCMS 2009»
13 years 6 months ago
Optimized Parallel Implementation of Gillespie's First Reaction Method on Graphics Processing Units
The simulation of chemical reacting systems is one of the most challenging topics in Systems Biology, due to their complexity and inherent randomness. The Gillespie's Stochas...
Cristian Dittamo, Davide Cangelosi