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» The Limits of Querying Ontologies
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ICFP
2010
ACM
13 years 8 months ago
Bidirectionalizing graph transformations
Bidirectional transformations provide a novel mechanism for synchronizing and maintaining the consistency of information between input and output. Despite many promising results o...
Soichiro Hidaka, Zhenjiang Hu, Kazuhiro Inaba, Hir...
BMCBI
2008
81views more  BMCBI 2008»
13 years 7 months ago
A perspective for biomedical data integration: Design of databases for flow cytometry
Background: The integration of biomedical information is essential for tackling medical problems. We describe a data model in the domain of flow cytometry (FC) allowing for massiv...
John Drakos, Marina Karakantza, Nicholas C. Zoumbo...
BMCBI
2008
120views more  BMCBI 2008»
13 years 7 months ago
E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI)
Background: The Codon Adaptation Index (CAI) is a measure of the synonymous codon usage bias for a DNA or RNA sequence. It quantifies the similarity between the synonymous codon u...
Pere Puigbò, Ignacio G. Bravo, Santiago Gar...
BMCBI
2008
173views more  BMCBI 2008»
13 years 7 months ago
Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments
Background: Microarray experiments measure changes in the expression of thousands of genes. The resulting lists of genes with changes in expression are then searched for biologica...
Stephen W. Tanner, Pankaj Agarwal
BMCBI
2008
105views more  BMCBI 2008»
13 years 7 months ago
Improving the prediction of mRNA extremities in the parasitic protozoan Leishmania
Background: Leishmania and other members of the Trypanosomatidae family diverged early on in eukaryotic evolution and consequently display unique cellular properties. Their appare...
Martin Smith, Mathieu Blanchette, Barbara Papadopo...