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» The Logical Execution Time Paradigm
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BMCBI
2008
214views more  BMCBI 2008»
13 years 10 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
BMCBI
2008
108views more  BMCBI 2008»
13 years 10 months ago
SPRINT: A new parallel framework for R
Background: Microarray analysis allows the simultaneous measurement of thousands to millions of genes or sequences across tens to thousands of different samples. The analysis of t...
Jon Hill, Matthew Hambley, Thorsten Forster, Murie...
PC
2006
218views Management» more  PC 2006»
13 years 10 months ago
A model based on cellular automata for the parallel simulation of 3D unsaturated flow
Cellular automata (CA) are discrete dynamic systems that have been used for modeling many physical systems. CA are often used as an alternative to model and solve large-scale syst...
Gianluigi Folino, Giuseppe Mendicino, Alfonso Sena...
VLSISP
2011
358views Database» more  VLSISP 2011»
13 years 4 months ago
Accelerating Machine-Learning Algorithms on FPGAs using Pattern-Based Decomposition
Machine-learning algorithms are employed in a wide variety of applications to extract useful information from data sets, and many are known to suffer from superlinear increases in ...
Karthik Nagarajan, Brian Holland, Alan D. George, ...
SIGMOD
2010
ACM
132views Database» more  SIGMOD 2010»
13 years 4 months ago
Durable top-k search in document archives
We propose and study a new ranking problem in versioned databases. Consider a database of versioned objects which have different valid instances along a history (e.g., documents i...
Leong Hou U, Nikos Mamoulis, Klaus Berberich, Srik...