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» The Model Evolution Calculus
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BMCBI
2004
126views more  BMCBI 2004»
13 years 8 months ago
A probabilistic model for the evolution of RNA structure
Background: For the purposes of finding and aligning noncoding RNA gene- and cis-regulatory elements in multiple-genome datasets, it is useful to be able to derive multi-sequence ...
Ian Holmes
ECCV
2002
Springer
14 years 10 months ago
Understanding and Modeling the Evolution of Critical Points under Gaussian Blurring
Abstract. In order to investigate the deep structure of Gaussian scale space images, one needs to understand the behaviour of critical points under the influence of parameter-drive...
Arjan Kuijper, Luc Florack
LION
2009
Springer
114views Optimization» more  LION 2009»
14 years 2 months ago
Substitution Matrices and Mutual Information Approaches to Modeling Evolution
Abstract. Substitution matrices are at the heart of Bioinformatics: sequence alignment, database search, phylogenetic inference, protein family classication are based on Blosum, P...
Stephan Kitchovitch, Yuedong Song, Richard C. van ...
NN
2007
Springer
267views Neural Networks» more  NN 2007»
13 years 7 months ago
Modeling of gene regulatory networks with hybrid differential evolution and particle swarm optimization
In the last decade, recurrent neural networks (RNNs) have attracted more efforts in inferring genetic regulatory networks (GRNs), using time series gene expression data from micro...
Rui Xu, Ganesh K. Venayagamoorthy, Donald C. Wunsc...
BMCBI
2011
13 years 3 months ago
Simulated evolution applied to study the genetic code optimality using a model of codon reassignments
Background: As the canonical code is not universal, different theories about its origin and organization have appeared. The optimization or level of adaptation of the canonical ge...
Jose Santos, Ángel Monteagudo