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» The Motif Tracking Algorithm
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ISAAC
2004
Springer
115views Algorithms» more  ISAAC 2004»
14 years 3 months ago
Randomized Algorithms for Motif Detection
Motivation: Motif detection for DNA sequences has many important applications in biological studies, e.g., locating binding sites and regulatory signals, and designing genetic prob...
Lusheng Wang, Liang Dong, Hui Fan
BMCBI
2005
92views more  BMCBI 2005»
13 years 9 months ago
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
Background: In a previous report (La et al., Proteins, 2005), we have demonstrated that the identification of phylogenetic motifs, protein sequence fragments conserving the overal...
David La, Dennis R. Livesay
ALMOB
2007
74views more  ALMOB 2007»
13 years 10 months ago
Evaluating deterministic motif significance measures in protein databases
Background: Assessing the outcome of motif mining algorithms is an essential task, as the number of reported motifs can be very large. Significance measures play a central role in...
Pedro Gabriel Ferreira, Paulo J. Azevedo
SPIRE
2004
Springer
14 years 3 months ago
Longest Motifs with a Functionally Equivalent Central Block
This paper presents a generalization of the notion of longest repeats with a block of k don’t care symbols introduced by [8] (for k fixed) to longest motifs composed of three pa...
Maxime Crochemore, Raffaele Giancarlo, Marie-Franc...
BIOCOMP
2010
13 years 7 months ago
Extraction of Protein Sequence Motifs Information by Bi-Clustering Algorithm
- The activities and function of proteins can potentially be determined by protein sequence motifs. Therefore, obtaining the universally conserved and crossed protein family bounda...
Vincent Yip, Bernard Chen, Sinan Kockara