Time series motif discovery is an important problem with applications in a variety of areas that range from telecommunications to medicine. Several algorithms have been proposed t...
Background: The identification of a consensus RNA motif often consists in finding a conserved secondary structure with minimum free energy in an ensemble of aligned sequences. How...
Identification of Transcription Factor Binding Site (TFBS) motifs in multiple DNA upstream sequences is important in understanding the mechanism of gene regulation. This identific...
The discovery of frequent musical patterns (motifs) is a relevant problem in musicology. This paper introduces an unsupervised algorithm to address this problem in symbolically-rep...
We consider the planted motif search problem, a problem that arises from the need to find transcription factor-binding sites in genomic information. One of the fastest non-exact a...