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» The Motif Tracking Algorithm
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SDM
2010
SIAM
202views Data Mining» more  SDM 2010»
13 years 9 months ago
Multiresolution Motif Discovery in Time Series
Time series motif discovery is an important problem with applications in a variety of areas that range from telecommunications to medicine. Several algorithms have been proposed t...
Nuno Castro, Paulo J. Azevedo
BMCBI
2006
141views more  BMCBI 2006»
13 years 11 months ago
Identification of consensus RNA secondary structures using suffix arrays
Background: The identification of a consensus RNA motif often consists in finding a conserved secondary structure with minimum free energy in an ensemble of aligned sequences. How...
Mohammad Anwar, Truong Nguyen, Marcel Turcotte
GECCO
2007
Springer
258views Optimization» more  GECCO 2007»
14 years 2 months ago
TFBS identification by position- and consensus-led genetic algorithm with local filtering
Identification of Transcription Factor Binding Site (TFBS) motifs in multiple DNA upstream sequences is important in understanding the mechanism of gene regulation. This identific...
Tak-Ming Chan, Kwong-Sak Leung, Kin-Hong Lee
JIIS
2011
99views more  JIIS 2011»
13 years 5 months ago
Mining transposed motifs in music
The discovery of frequent musical patterns (motifs) is a relevant problem in musicology. This paper introduces an unsupervised algorithm to address this problem in symbolically-rep...
Aída Jiménez, Miguel Molina-Solana, ...
BIBE
2006
IEEE
14 years 5 months ago
Extending Pattern Branching to Handle Challenging Instances
We consider the planted motif search problem, a problem that arises from the need to find transcription factor-binding sites in genomic information. One of the fastest non-exact a...
Jaime Davila, Sanguthevar Rajasekaran