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» The Motif Tracking Algorithm
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BMCBI
2006
103views more  BMCBI 2006»
13 years 9 months ago
Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequili
Background: The discovery of cis-regulatory motifs still remains a challenging task even though the number of sequenced genomes is constantly growing. Computational analyses using...
Kenneth W. Berendzen, Kurt Stüber, Klaus Hart...
ICDM
2009
IEEE
121views Data Mining» more  ICDM 2009»
14 years 4 months ago
Finding Time Series Motifs in Disk-Resident Data
—Time series motifs are sets of very similar subsequences of a long time series. They are of interest in their own right, and are also used as inputs in several higher-level data...
Abdullah Mueen, Eamonn J. Keogh, Nima Bigdely Sham...
RECOMB
2001
Springer
14 years 10 months ago
Finding motifs using random projections
motif discovery problem abstracts the task of discovering short, conserved sites in genomic DNA. Pevzner and Sze recently described a precise combinatorial formulation of motif di...
Jeremy Buhler, Martin Tompa
WABI
2005
Springer
143views Bioinformatics» more  WABI 2005»
14 years 3 months ago
A Faster Algorithm for Detecting Network Motifs
Motifs in a network are small connected subnetworks that occur in significantly higher frequencies than in random networks. They have recently gathered much attention as a useful ...
Sebastian Wernicke
CSB
2003
IEEE
108views Bioinformatics» more  CSB 2003»
14 years 3 months ago
A Pattern Matching Algorithm for Codon Optimization and CpG Motif-Engineering in DNA Expression Vectors
Codon optimization enhances the efficiency of DNA expression vectors used in DNA vaccination and gene therapy by increasing protein expression. Additionally, certain nucleotide mo...
Ravi Vijaya Satya, Amar Mukherjee, Udaykumar Ranga