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RECOMB
2010
Springer
14 years 15 days ago
SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings
Abstract. We consider the problem of aligning two metabolic pathways. Unlike traditional approaches, we do not restrict the alignment to one-to-one mappings between the molecules o...
Ferhat Ay, Tamer Kahveci
BMCBI
2006
123views more  BMCBI 2006»
13 years 7 months ago
Permutation test for periodicity in short time series data
Background: Periodic processes, such as the circadian rhythm, are important factors modulating and coordinating transcription of genes governing key metabolic pathways. Theoretica...
Andrey A. Ptitsyn, Sanjin Zvonic, Jeffrey M. Gimbl...
JCB
2007
198views more  JCB 2007»
13 years 7 months ago
Bayesian Hierarchical Model for Large-Scale Covariance Matrix Estimation
Many bioinformatics problems can implicitly depend on estimating large-scale covariance matrix. The traditional approaches tend to give rise to high variance and low accuracy esti...
Dongxiao Zhu, Alfred O. Hero III
SPAA
2012
ACM
11 years 9 months ago
Allowing each node to communicate only once in a distributed system: shared whiteboard models
In this paper we study distributed algorithms on massive graphs where links represent a particular relationship between nodes (for instance, nodes may represent phone numbers and ...
Florent Becker, Adrian Kosowski, Nicolas Nisse, Iv...
JDWM
2010
180views more  JDWM 2010»
13 years 5 months ago
Investigating the Properties of a Social Bookmarking and Tagging Network
Social networks and collaborative tagging systems are rapidly gaining popularity as a primary means for storing and sharing data among friends, family, colleagues, or perfect stra...
Ralitsa Angelova, Marek Lipczak, Evangelos E. Mili...