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ICPR
2008
IEEE
14 years 10 months ago
Fast protein homology and fold detection with sparse spatial sample kernels
In this work we present a new string similarity feature, the sparse spatial sample (SSS). An SSS is a set of short substrings at specific spatial displacements contained in the or...
Pai-Hsi Huang, Pavel P. Kuksa, Vladimir Pavlovic
PKDD
2009
Springer
147views Data Mining» more  PKDD 2009»
14 years 3 months ago
Kernel Polytope Faces Pursuit
Abstract. Polytope Faces Pursuit (PFP) is a greedy algorithm that approximates the sparse solutions recovered by 1 regularised least-squares (Lasso) [4,10] in a similar vein to (Or...
Tom Diethe, Zakria Hussain
ICPR
2004
IEEE
14 years 10 months ago
Kernel-Based Method for Tracking Objects with Rotation and Translation
This paper addresses the issue of tracking translation and rotation simultaneously. Starting with a kernel-based spatial-spectral model for object representation, we define an ?-n...
Haihong Zhang, Liyuan Li, Weimin Huang, Zhiyong Hu...
ICML
2002
IEEE
14 years 9 months ago
Syllables and other String Kernel Extensions
During the last years, the use of string kernels that compare documents has been shown to achieve good results on text classification problems. In this paper we introduce the appl...
Craig Saunders, Hauke Tschach, John Shawe-Taylor
BMCBI
2006
120views more  BMCBI 2006»
13 years 9 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu