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BMCBI
2008
110views more  BMCBI 2008»
13 years 9 months ago
Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated da
Background: We have previously described an approach to predicting the substrate specificity of serine-threonine protein kinases. The method, named Predikin, identifies key conser...
Neil F. W. Saunders, Ross I. Brinkworth, Thomas Hu...
NAR
2011
305views Computer Vision» more  NAR 2011»
13 years 14 days ago
CDD: a Conserved Domain Database for the functional annotation of proteins
NCBI’s Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from...
Aron Marchler-Bauer, Shennan Lu, John B. Anderson,...
ECCB
2005
IEEE
14 years 3 months ago
SIMAP - The similarity matrix of proteins
Similarity Matrix of Proteins (SIMAP) (http://mips.gsf. 10 de/simap) provides a database based on a precomputed similarity matrix covering the similarity space formed by .4 millio...
Roland Arnold, Thomas Rattei, Patrick Tischler, Mi...
BMCBI
2005
93views more  BMCBI 2005»
13 years 9 months ago
SPdb - a signal peptide database
Background: The signal peptide plays an important role in protein targeting and protein translocation in both prokaryotic and eukaryotic cells. This transient, short peptide seque...
Khar Heng Choo, Tin Wee Tan, Shoba Ranganathan
AIIA
2005
Springer
14 years 3 months ago
BIOPACMAS: A Personalized, Adaptive, and Cooperative MultiAgent System for Predicting Protein Secondary Structure
In this paper, we illustrate an application aimed at predicting protein secondary structure. The proposed system has been devised using PACMAS, a generic architecture designed to s...
Giuliano Armano, Gianmaria Mancosu, Alessandro Orr...