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» The PIR-International Protein Sequence Database
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BMCBI
2006
172views more  BMCBI 2006»
13 years 9 months ago
A novel scoring schema for peptide identification by searching protein sequence databases using tandem mass spectrometry data
Background: Tandem mass spectrometry (MS/MS) is a powerful tool for protein identification. Although great efforts have been made in scoring the correlation between tandem mass sp...
Zhuo Zhang, Shiwei Sun, Xiaopeng Zhu, Suhua Chang,...
CSR
2006
Springer
14 years 1 months ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
VLDB
2002
ACM
184views Database» more  VLDB 2002»
14 years 10 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
BMCBI
2005
119views more  BMCBI 2005»
13 years 9 months ago
The distance-profile representation and its application to detection of distantly related protein families
Background: Detecting homology between remotely related protein families is an important problem in computational biology since the biological properties of uncharacterized protei...
Chin-Jen Ku, Golan Yona