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PDCN
2004
15 years 4 months ago
Scalable parallel algorithms for difficult combinatorial problems: A case study in optimization
A novel combination of emergent algorithmic methods, powerful computational platforms and supporting infrastructure is described. These complementary tools and technologies are us...
Faisal N. Abu-Khzam, Michael A. Langston, Pushkar ...
150
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BMCBI
2008
89views more  BMCBI 2008»
15 years 3 months ago
R/parallel - speeding up bioinformatics analysis with R
Background: R is the preferred tool for statistical analysis of many bioinformaticians due in part to the increasing number of freely available analytical methods. Such methods ca...
Gonzalo Vera, Ritsert C. Jansen, Remo Suppi
BMCBI
2010
164views more  BMCBI 2010»
15 years 3 months ago
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
Background: Molecular interaction networks can be efficiently studied using network visualization software such as Cytoscape. The relevant nodes, edges and their attributes can be...
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geer...
ALMOB
2006
155views more  ALMOB 2006»
15 years 3 months ago
Refining motifs by improving information content scores using neighborhood profile search
The main goal of the motif finding problem is to detect novel, over-represented unknown signals in a set of sequences (e.g. transcription factor binding sites in a genome). The mo...
Chandan K. Reddy, Yao-Chung Weng, Hsiao-Dong Chian...
BMCBI
2006
155views more  BMCBI 2006»
15 years 3 months ago
AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data
Background: DNA microarrays are a powerful tool for monitoring the expression of tens of thousands of genes simultaneously. With the advance of microarray technology, the challeng...
Guoqing Lu, The V. Nguyen, Yuannan Xia, Michael Fr...
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