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RSFDGRC
2005
Springer
192views Data Mining» more  RSFDGRC 2005»
14 years 3 months ago
An Open Source Microarray Data Analysis System with GUI: Quintet
We address Quintet, an R-based unified cDNA microarray data analysis system with GUI. Five principal categories of microarray data analysis have been coherently integrated in Quin...
Jun-kyoung Choe, Tae-Hoon Chung, Sunyong Park, Hwa...
BMCBI
2006
171views more  BMCBI 2006»
13 years 10 months ago
The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies
Background: Intensity values measured by Affymetrix microarrays have to be both normalized, to be able to compare different microarrays by removing non-biological variation, and s...
Roel G. W. Verhaak, Frank J. T. Staal, Peter J. M....
BMCBI
2010
164views more  BMCBI 2010»
13 years 10 months ago
Investigating the validity of current network analysis on static conglomerate networks by protein network stratification
Background: A molecular network perspective forms the foundation of systems biology. A common practice in analyzing protein-protein interaction (PPI) networks is to perform networ...
Minlu Zhang, Long J. Lu
SP
2008
IEEE
122views Security Privacy» more  SP 2008»
13 years 10 months ago
Large-scale phylogenetic analysis on current HPC architectures
Abstract. Phylogenetic inference is considered a grand challenge in Bioinformatics due to its immense computational requirements. The increasing popularity and availability of larg...
Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew...
KDD
2012
ACM
271views Data Mining» more  KDD 2012»
12 years 13 days ago
GigaTensor: scaling tensor analysis up by 100 times - algorithms and discoveries
Many data are modeled as tensors, or multi dimensional arrays. Examples include the predicates (subject, verb, object) in knowledge bases, hyperlinks and anchor texts in the Web g...
U. Kang, Evangelos E. Papalexakis, Abhay Harpale, ...