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CGO
2004
IEEE
14 years 2 months ago
Custom Data Layout for Memory Parallelism
In this paper, we describe a generalized approach to deriving a custom data layout in multiple memory banks for array-based computations, to facilitate high-bandwidth parallel mem...
Byoungro So, Mary W. Hall, Heidi E. Ziegler
RECOMB
2001
Springer
14 years 11 months ago
Towards predicting coiled-coil protein interactions
Protein-protein interactions play a central role in many cellular functions, and as whole-genome data accumulates, computational methods for predicting these interactions become i...
Mona Singh, Peter S. Kim
BICOB
2009
Springer
14 years 3 months ago
A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants
Protein phosphorylation is a crucial regulatory mechanism in various organisms. With recent improvements in mass spectrometry, phosphorylation site data are rapidly accumulating. D...
Jianjiong Gao, Ganesh Kumar Agrawal, Jay J. Thelen...
BMCBI
2006
106views more  BMCBI 2006»
13 years 11 months ago
Gene and protein nomenclature in public databases
Background: Frequently, several alternative names are in use for biological objects such as genes and proteins. Applications like manual literature search, automated text-mining, ...
Katrin Fundel, Ralf Zimmer
JCB
2006
66views more  JCB 2006»
13 years 11 months ago
Pairwise Alignment of Protein Interaction Networks
With an ever-increasing amount of available data on protein
Mehmet Koyutürk, Yohan Kim, Umut Topkara, Sha...