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BMCBI
2008
112views more  BMCBI 2008»
13 years 7 months ago
GlycomeDB - integration of open-access carbohydrate structure databases
Background: Although carbohydrates are the third major class of biological macromolecules, after proteins and DNA, there is neither a comprehensive database for carbohydrate struc...
René Ranzinger, Stephan Herget, Thomas Wett...
BIOINFORMATICS
2007
151views more  BIOINFORMATICS 2007»
13 years 7 months ago
A new protein-protein docking scoring function based on interface residue properties
Motivation: Protein–protein complexes are known to play key roles in many cellular processes. However, they are often not accessible to experimental study because of their low s...
Julie Bernauer, Jérôme Azé, Jo...
JCC
1998
71views more  JCC 1998»
13 years 7 months ago
Docking small ligands in flexible binding sites
: A novel procedure for docking ligands in a flexible binding site is presented. It relies on conjugate gradient minimization, during which nonbonded interactions are gradually swi...
Joannis Apostolakis, Andreas Plückthun, Amede...
BMCBI
2008
127views more  BMCBI 2008»
13 years 7 months ago
AMMO-Prot: amine system project 3D-model finder
Background: Amines are biogenic amino acid derivatives, which play pleiotropic and very important yet complex roles in animal physiology. For many other relevant biomolecules, bio...
Ismael Navas Delgado, Raúl Montañez,...
COMPGEOM
2006
ACM
14 years 1 months ago
Vines and vineyards by updating persistence in linear time
Persistent homology is the mathematical core of recent work on shape, including reconstruction, recognition, and matching. Its pertinent information is encapsulated by a pairing o...
David Cohen-Steiner, Herbert Edelsbrunner, Dmitriy...