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» The Protein Ontology: a structured representation of protein...
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SSDBM
2003
IEEE
83views Database» more  SSDBM 2003»
14 years 1 months ago
PiQA: An Algebra for Querying Protein Data Sets
Life science researchers frequently need to query large protein data sets in a variety of different ways. Protein data sets have a rich structure that includes its primary structu...
Sandeep Tata, Jignesh M. Patel
JCB
2007
83views more  JCB 2007»
13 years 7 months ago
Evolutionary Networks in the Formatted Protein Sequence Space
In our recent work, a new approach to establish sequence relatedness, by walking through the protein sequence space, was introduced. The sequence space is built from 20 amino acid...
Zakharia M. Frenkel, Edward N. Trifonov
BIBM
2007
IEEE
130views Bioinformatics» more  BIBM 2007»
14 years 2 months ago
Analysis of Protein Protein Dimeric Interfaces
We analyzed the structural properties and the local surface environment of surface amino acid residues of proteins using a large, non-redundant dataset of 2383 protein chains in d...
Feihong Wu, Fadi Towfic, Drena Dobbs, Vasant Honav...
BMCBI
2010
208views more  BMCBI 2010»
13 years 7 months ago
Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models
Background: Genome sequencing projects have expanded the gap between the amount of known protein sequences and structures. The limitations of current high resolution structure det...
Kasper Stovgaard, Christian Andreetta, Jesper Ferk...
BMCBI
2005
159views more  BMCBI 2005»
13 years 7 months ago
Columba: an integrated database of proteins, structures, and annotations
Background: Structural and functional research often requires the computation of sets of protein structures based on certain properties of the proteins, such as sequence features,...
Silke Trißl, Kristian Rother, Heiko Mül...