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BMCBI
2010
133views more  BMCBI 2010»
13 years 8 months ago
Improving de novo sequence assembly using machine learning and comparative genomics for overlap correction
Background: With the rapid expansion of DNA sequencing databases, it is now feasible to identify relevant information from prior sequencing projects and completed genomes and appl...
Lance E. Palmer, Mathäus Dejori, Randall A. B...
SCFBM
2008
91views more  SCFBM 2008»
13 years 8 months ago
Simple tools for assembling and searching high-density picolitre pyrophosphate sequence data
Background: The advent of pyrophosphate sequencing makes large volumes of sequencing data available at a lower cost than previously possible. However, the short read lengths are d...
Nicolas J. Parker, Andrew G. Parker
BMCBI
2010
137views more  BMCBI 2010»
13 years 8 months ago
BS Seeker: precise mapping for bisulfite sequencing
Background: Bisulfite sequencing using next generation sequencers yields genome-wide measurements of DNA methylation at single nucleotide resolution. Traditional aligners are not ...
Pao-Yang Chen, Shawn Cokus, Matteo Pellegrini
ETRA
2008
ACM
112views Biometrics» more  ETRA 2008»
13 years 10 months ago
KiEV: a tool for visualization of reading and writing processes in translation of text
The increase in usage of eye-tracking technology to study text translation processes has revealed the need for effective tools for visualization of the data collected. We propose ...
Oleg Spakov, Kari-Jouko Räihä
ACL
2010
13 years 6 months ago
Reading between the Lines: Learning to Map High-Level Instructions to Commands
In this paper, we address the task of mapping high-level instructions to sequences of commands in an external environment. Processing these instructions is challenging--they posit...
S. R. K. Branavan, Luke S. Zettlemoyer, Regina Bar...