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RECOMB
2010
Springer
14 years 3 months ago
A Novel Abundance-Based Algorithm for Binning Metagenomic Sequences Using l-Tuples
Abstract. Metagenomics is the study of microbial communities sampled directly from their natural environment, without prior culturing. Among the computational tools recently develo...
Yu-Wei Wu, Yuzhen Ye
BMCBI
2011
13 years 3 months ago
Removing Noise From Pyrosequenced Amplicons
Background: In many environmental genomics applications a homologous region of DNA from a diverse sample is first amplified by PCR and then sequenced. The next generation sequenci...
Christopher Quince, Anders Lanzén, Russell ...
CORR
2011
Springer
191views Education» more  CORR 2011»
13 years 3 months ago
Using Paxos to Build a Scalable, Consistent, and Highly Available Datastore
Spinnaker is an experimental datastore that is designed to run on a large cluster of commodity servers in a single datacenter. It features key-based range partitioning, 3-way repl...
Jun Rao, Eugene J. Shekita, Sandeep Tata
INTERSPEECH
2010
13 years 3 months ago
Investigating articulatory setting - pauses, ready position, and rest - using real-time MRI
We present a novel automatic procedure to analyze articulatory setting (AS) or basis of articulation using realtime magnetic resonance images (rt-MRI) of the human vocal tract rec...
Vikram Ramanarayanan, Dani Byrd, Louis Goldstein, ...
BMCBI
2011
13 years 3 months ago
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI
Background: Next-generation sequencing technologies have led to the high-throughput production of sequence data (reads) at low cost. However, these reads are significantly shorter...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell