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BIBE
2006
IEEE
119views Bioinformatics» more  BIBE 2006»
14 years 1 months ago
Large Grain Size Stochastic Optimization Alignment
DNA sequence alignment is a critical step in identifying homology between organisms. The most widely used alignment program, ClustalW, is known to suffer from the local minima pro...
Perry Ridge, Hyrum Carroll, Dan Sneddon, Mark J. C...
CCGRID
2006
IEEE
14 years 1 months ago
Proposal of MPI Operation Level Checkpoint/Rollback and One Implementation
With the increasing number of processors in modern HPC(High Performance Computing) systems, there are two emergent problems to solve. One is scalability, the other is fault tolera...
Yuan Tang, Graham E. Fagg, Jack Dongarra
IMSCCS
2006
IEEE
14 years 1 months ago
GenomeBlast: A Web Tool for Small Genome Comparison
Comparative genomics has become an essential approach for identifying homologous gene candidates and their functions, and for studying genome evolution. We developed GenomeBlast, ...
Guoqing Lu, Liying Jiang, Resa M. Kotalik, Thaine ...
IPPS
2006
IEEE
14 years 1 months ago
Parallel genetic algorithm for SPICE model parameter extraction
Models of simulation program with integrated circuit emphasis (SPICE) are currently playing a central role in the connection between circuit design and chip fabrication communitie...
Yiming Li, Yen-Yu Cho
SAC
2006
ACM
14 years 1 months ago
Supporting transparent model update in distributed CASE tool integration
Model Driven Architecture (MDA) is a software development approach that focuses on models. In order to support MDA, a lot of CASE tools have emerged; each of them provides a diffe...
Prawee Sriplakich, Xavier Blanc, Marie-Pierre Gerv...