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BIBM
2010
IEEE
151views Bioinformatics» more  BIBM 2010»
15 years 4 months ago
Probabilistic topic modeling for genomic data interpretation
Recently, the concept of a species containing both core and distributed genes, known as the supra- or pangenome theory, has been introduced. In this paper, we aim to develop a new ...
Xin Chen, Xiaohua Hu, Xiajiong Shen, Gail Rosen
RECOMB
2001
Springer
16 years 6 months ago
Analysis techniques for microarray time-series data
We address possible limitations of publicly available data sets of yeast gene expression. We study the predictability of known regulators via time-series analysis, and show that l...
Vladimir Filkov, Steven Skiena, Jizu Zhi
ESCIENCE
2006
IEEE
16 years 3 days ago
An Extended Extremal Optimisation Model for Parallel Architectures
: A relatively new meta-heuristic, known as extremal optimisation (EO), is based on the evolutionary science notion that poorly performing genes of an individual are replaced by ra...
Marcus Randall, Andrew Lewis
GI
2004
Springer
15 years 11 months ago
Dynamic information fusion for genome annotation
: The need for demand-driven and scaleable integration of heterogeneous data sources is inherent to the process of genome annotation. In this paper we describe the Gene-EYe archite...
Heiko Müller, Peter Rieger, Katja Tham, Johan...
156
Voted
CMSB
2006
Springer
15 years 9 months ago
Regulatory Network Reconstruction Using Stochastic Logical Networks
Abstract. This paper presents a method for regulatory network reconstruction from experimental data. We propose a mathematical model for regulatory interactions, based on the work ...
Bartek Wilczynski, Jerzy Tiuryn