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BMCBI
2008
145views more  BMCBI 2008»
13 years 8 months ago
Directed acyclic graph kernels for structural RNA analysis
Background: Recent discoveries of a large variety of important roles for non-coding RNAs (ncRNAs) have been reported by numerous researchers. In order to analyze ncRNAs by kernel ...
Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubum...
IPPS
2007
IEEE
14 years 2 months ago
RNAVLab: A unified environment for computational RNA structure analysis based on grid computing technology
Ribonucleic acid (RNA) molecules play important roles in many biological processes including gene expression and regulation. An RNA molecule is a linear polymer which folds back o...
Michela Taufer, Ming-Ying Leung, Kyle L. Johnson, ...
BMCBI
2004
133views more  BMCBI 2004»
13 years 8 months ago
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
Background: RNA secondary structure prediction methods based on probabilistic modeling can be developed using stochastic context-free grammars (SCFGs). Such methods can readily co...
Robin D. Dowell, Sean R. Eddy
ISMB
1994
13 years 10 months ago
RNA Modeling Using Gibbs Sampling and Stochastic Context Free Grammars
Leslie Grate, Mark Herbster, Richard Hughey, David...
SGP
2003
13 years 10 months ago
Stellar Subdivision Grammars
In this paper we develop a new description for subdivision surfaces based on a graph grammar formalism. Subdivision schemes are specified by a context sensitive grammar in which ...
Luiz Velho