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WIA
2007
Springer
14 years 2 months ago
Analyzing Ambiguity of Context-Free Grammars
It has been known since 1962 that the ambiguity problem for context-free grammars is undecidable. Ambiguity in context-free grammars is a recurring problem in language design and p...
Claus Brabrand, Robert Giegerich, Anders Mø...
BIOCOMP
2006
13 years 10 months ago
Acceleration of Covariance Models for Non-coding RNA Search
Stochastic context-free grammar (SCFG) based models for non-coding RNA (ncRNA) gene searches are much more powerful than regular grammar based models due to the ability to model in...
Scott F. Smith 0002
BMCBI
2011
13 years 3 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
PRICAI
2004
Springer
14 years 1 months ago
Computational Methods for Identification of Human microRNA Precursors
MicroRNA (miRNA), one of non-coding RNAs (ncRNAs), regulates gene expression directly by arresting the messenger RNA (mRNA) translation, which is important for identifying putative...
Jin-Wu Nam, Wha-Jin Lee, Byoung-Tak Zhang
JMLR
2010
134views more  JMLR 2010»
13 years 3 months ago
Using Contextual Representations to Efficiently Learn Context-Free Languages
We present a polynomial update time algorithm for the inductive inference of a large class of context-free languages using the paradigm of positive data and a membership oracle. W...
Alexander Clark, Rémi Eyraud, Amaury Habrar...