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DASFAA
2003
IEEE
151views Database» more  DASFAA 2003»
14 years 9 days ago
Approximate String Matching in DNA Sequences
Approximate string matching on large DNA sequences data is very important in bioinformatics. Some studies have shown that suffix tree is an efficient data structure for approxim...
Lok-Lam Cheng, David Wai-Lok Cheung, Siu-Ming Yiu
IPPS
2006
IEEE
14 years 1 months ago
Implementation of a programmable array processor architecture for approximate string matching algorithms on FPGAs
Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
Panagiotis D. Michailidis, Konstantinos G. Margari...
CPM
2000
Springer
175views Combinatorics» more  CPM 2000»
13 years 11 months ago
Approximate String Matching over Ziv-Lempel Compressed Text
Abstract. We present a solution to the problem of performing approximate pattern matching on compressed text. The format we choose is the Ziv-Lempel family, speci cally the LZ78 an...
Juha Kärkkäinen, Gonzalo Navarro, Esko U...
ASAP
2004
IEEE
185views Hardware» more  ASAP 2004»
13 years 10 months ago
Families of FPGA-Based Algorithms for Approximate String Matching
Dynamic programming for approximate string matching is a large family of different algorithms, which vary significantly in purpose, complexity, and hardware utilization. Many impl...
Tom Van Court, Martin C. Herbordt
SIGMOD
2008
ACM
142views Database» more  SIGMOD 2008»
14 years 7 months ago
Cost-based variable-length-gram selection for string collections to support approximate queries efficiently
Approximate queries on a collection of strings are important in many applications such as record linkage, spell checking, and Web search, where inconsistencies and errors exist in...
Xiaochun Yang, Bin Wang, Chen Li