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» The ed-tree: An Index for Large DNA Sequence Databases
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KDD
2000
ACM
222views Data Mining» more  KDD 2000»
13 years 11 months ago
Interactive exploration of very large relational datasets through 3D dynamic projections
The grand tour, one of the most popular methods for multidimensional data exploration, is based on orthogonally projecting multidimensional data to a sequence of lower dimensional...
Li Yang
BMCBI
2006
100views more  BMCBI 2006»
13 years 7 months ago
DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions
Background: Many genome projects are left unfinished due to complex, repeated regions. Finishing is the most time consuming step in sequencing and current finishing tools are not ...
Erik Arner, Martti T. Tammi, Anh-Nhi Tran, Ellen K...
BMCBI
2011
12 years 11 months ago
Structator: fast index-based search for RNA sequence-structure patterns
Background: The secondary structure of RNA molecules is intimately related to their function and often more conserved than the sequence. Hence, the important task of searching dat...
Fernando Meyer, Stefan Kurtz, Rolf Backofen, Sebas...
ICDE
2008
IEEE
125views Database» more  ICDE 2008»
14 years 9 months ago
RAD: A Scalable Framework for Annotator Development
Developments in semantic search technology have motivated the need for efficient and scalable entity annotation techniques. We demonstrate RAD: a tool for Rapid Annotator Developme...
Sanjeet Khaitan, Ganesh Ramakrishnan, Sachindra Jo...
VLDB
2005
ACM
162views Database» more  VLDB 2005»
14 years 1 months ago
FiST: Scalable XML Document Filtering by Sequencing Twig Patterns
In recent years, publish-subscribe (pub-sub) systems based on XML document filtering have received much attention. In a typical pubsub system, subscribed users specify their inte...
Joonho Kwon, Praveen Rao, Bongki Moon, Sukho Lee