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» The ed-tree: An Index for Large DNA Sequence Databases
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NAR
2008
100views more  NAR 2008»
13 years 7 months ago
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts
Here we report the new features and improvements in our latest release of the H-Invitational Database (H-InvDB; http://www.h-invitational.jp/), a comprehensive annotation resource...
SIGMOD
2007
ACM
169views Database» more  SIGMOD 2007»
14 years 7 months ago
Genome-scale disk-based suffix tree indexing
With the exponential growth of biological sequence databases, it has become critical to develop effective techniques for storing, querying, and analyzing these massive data. Suffi...
Benjarath Phoophakdee, Mohammed J. Zaki
CORR
2010
Springer
219views Education» more  CORR 2010»
13 years 7 months ago
Finding Sequential Patterns from Large Sequence Data
Data mining is the task of discovering interesting patterns from large amounts of data. There are many data mining tasks, such as classification, clustering, association rule mini...
Mahdi Esmaeili, Fazekas Gabor
IPPS
2003
IEEE
14 years 26 days ago
Accurate Method for Fast Design of Diagnostic Oligonucleotide Probe Sets for DNA Microarrays
We present a method for the automatic generation of oligonucleotide probe sets for DNA microarrays. This approach is well suited particularly for specificity evaluation of design...
Andreas Krause, Markus Kräutner, Harald Meier
BMCBI
2006
116views more  BMCBI 2006»
13 years 7 months ago
TaxMan: a taxonomic database manager
Background: Phylogenetic analysis of large, multiple-gene datasets, assembled from public sequence databases, is rapidly becoming a popular way to approach difficult phylogenetic ...
Martin Jones, Mark Blaxter