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BMCBI
2005
87views more  BMCBI 2005»
13 years 8 months ago
Efficient decoding algorithms for generalized hidden Markov model gene finders
Background: The Generalized Hidden Markov Model (GHMM) has proven a useful framework for the task of computational gene prediction in eukaryotic genomes, due to its flexibility an...
William H. Majoros, Mihaela Pertea, Arthur L. Delc...
BMCBI
2010
88views more  BMCBI 2010»
13 years 8 months ago
FastTagger: an efficient algorithm for genome-wide tag SNP selection using multi-marker linkage disequilibrium
Background: Human genome contains millions of common single nucleotide polymorphisms (SNPs) and these SNPs play an important role in understanding the association between genetic ...
Guimei Liu, Yue Wang, Limsoon Wong
ISAAC
1994
Springer
95views Algorithms» more  ISAAC 1994»
14 years 23 days ago
Efficient Sequential and Parallel Algorithms for the Negative Cycle Problem
We present here an algorithm for detecting (and outputting, if exists) a negative cycle in an n-vertex planar digraph G with real
Dimitris J. Kavvadias, Grammati E. Pantziou, Paul ...
SPAA
1993
ACM
14 years 23 days ago
On Gazit and Miller's Parallel Algorithm for Planar Separators: Achieving Greater Efficiency Through Random Sampling
We show how to obtain a work-efficient parallel algorithm for finding a planar separator. The algorithm requires O(rz’ ) time for any given positive constant e.
Philip N. Klein
ACST
2006
13 years 10 months ago
An efficient search algorithm for partially ordered sets
Consider the problem of membership query for a given partially ordered set. We devise a greedy algorithm which can produce near-optimal search strategies. Rigorous analysis has be...
Yan Chen