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» The elastic net algorithm and protein structure prediction
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JCB
2007
144views more  JCB 2007»
13 years 7 months ago
Statistical Estimation of Statistical Mechanical Models: Helix-Coil Theory and Peptide Helicity Prediction
Analysis of biopolymer sequences and structures generally adopts one of two approaches: use of detailed biophysical theoretical models of the system with experimentally-determined...
Scott C. Schmidler, Joseph E. Lucas, Terrence G. O...
GCB
1998
Springer
78views Biometrics» more  GCB 1998»
13 years 12 months ago
Computational approaches to identify Leucine Zippers
The leucine zipper is a dimerization domain occurring mostly in regulatory and thus in many oncogenic proteins. The leucine repeat in the sequence has been traditionally used for ...
Erich Bornberg-Bauer
RECOMB
2003
Springer
14 years 8 months ago
Modeling dependencies in protein-DNA binding sites
The availability of whole genome sequences and high-throughput genomic assays opens the door for in silico analysis of transcription regulation. This includes methods for discover...
Yoseph Barash, Gal Elidan, Nir Friedman, Tommy Kap...
BMCBI
2010
117views more  BMCBI 2010»
13 years 7 months ago
New decoding algorithms for Hidden Markov Models using distance measures on labellings
Background: Existing hidden Markov model decoding algorithms do not focus on approximately identifying the sequence feature boundaries. Results: We give a set of algorithms to com...
Daniel G. Brown 0001, Jakub Truszkowski
ACL
2006
13 years 9 months ago
Semantic Taxonomy Induction from Heterogenous Evidence
We propose a novel algorithm for inducing semantic taxonomies. Previous algorithms for taxonomy induction have typically focused on independent classifiers for discovering new sin...
Rion Snow, Daniel Jurafsky, Andrew Y. Ng