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BCB
2010
156views Bioinformatics» more  BCB 2010»
13 years 4 months ago
RepFrag: a graph based method for finding repeats and transposons from fragmented genomes
Growing sequencing and assembly efforts have been met by the advances in high throughput machines. However, the presence of massive amounts of repeats and transposons complicates ...
Nirmalya Bandyopadhyay, A. Mark Settles, Tamer Kah...
BMCBI
2010
219views more  BMCBI 2010»
13 years 4 months ago
BiologicalNetworks 2.0 - an integrative view of genome biology data
Background: A significant problem in the study of mechanisms of an organism's development is the elucidation of interrelated factors which are making an impact on the differe...
Sergey Kozhenkov, Yulia Dubinina, Mayya Sedova, Am...
DAM
2011
13 years 4 months ago
On minimal Sturmian partial words
Partial words, which are sequences that may have some undefined positions called holes, can be viewed as sequences over an extended alphabet A = A ∪ { }, where stands for a hol...
Francine Blanchet-Sadri, John Lensmire
CORR
2010
Springer
122views Education» more  CORR 2010»
13 years 4 months ago
Concavity of Mutual Information Rate for Input-Restricted Finite-State Memoryless Channels at High SNR
We consider a finite-state memoryless channel with i.i.d. channel state and the input Markov process supported on a mixing finite-type constraint. We discuss the asymptotic behavio...
Guangyue Han, Brian H. Marcus
BMCBI
2011
13 years 3 months ago
Analysis on the reconstruction accuracy of the Fitch method for inferring ancestral states
Background: As one of the most widely used parsimony methods for ancestral reconstruction, the Fitch method minimizes the total number of hypothetical substitutions along all bran...
Jialiang Yang, Jun Li, Liuhuan Dong, Stefan Gr&uum...