Growing sequencing and assembly efforts have been met by the advances in high throughput machines. However, the presence of massive amounts of repeats and transposons complicates ...
Nirmalya Bandyopadhyay, A. Mark Settles, Tamer Kah...
Background: A significant problem in the study of mechanisms of an organism's development is the elucidation of interrelated factors which are making an impact on the differe...
Partial words, which are sequences that may have some undefined positions called holes, can be viewed as sequences over an extended alphabet A = A ∪ { }, where stands for a hol...
We consider a finite-state memoryless channel with i.i.d. channel state and the input Markov process supported on a mixing finite-type constraint. We discuss the asymptotic behavio...
Background: As one of the most widely used parsimony methods for ancestral reconstruction, the Fitch method minimizes the total number of hypothetical substitutions along all bran...
Jialiang Yang, Jun Li, Liuhuan Dong, Stefan Gr&uum...