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BMCBI
2005
97views more  BMCBI 2005»
13 years 10 months ago
Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data
Background: As genomes evolve after speciation, gene content, coding sequence, gene expression, and splicing all diverge with time from ancestors with close relatives. A minimum e...
Roald Rossnes, Ingvar Eidhammer, David A. Liberles
ICPADS
2005
IEEE
14 years 3 months ago
Exploiting Multi-level Parallelism for Homology Search using General Purpose Processors
New biological experimental techniques are continuing to generate large amounts of data using DNA, RNA, human genome and protein sequences. The quantity and quality of data from t...
Xiandong Meng, Vipin Chaudhary
BMCBI
2005
136views more  BMCBI 2005»
13 years 10 months ago
Identification of clustered microRNAs using an ab initio prediction method
Background: MicroRNAs (miRNAs) are endogenous 21 to 23-nucleotide RNA molecules that regulate protein-coding gene expression in plants and animals via the RNA interference pathway...
Alain Sewer, Nicodème Paul, Pablo Landgraf,...
SIGMOD
2004
ACM
88views Database» more  SIGMOD 2004»
14 years 10 months ago
Using Reasoning to Guide Annotation with Gene Ontology Terms in GOAT
High-quality annotation of biological data is central to bioinformatics. Annotation using terms from ontologies provides reliable computational access to data. The Gene Ontology (...
Michael Bada, Daniele Turi, Robin McEntire, Robert...
ICDE
2007
IEEE
229views Database» more  ICDE 2007»
14 years 4 months ago
Data-quality Guided Load Shedding for Expensive In-Network Data Processing
In situ wireless sensor networks, not only have to route sensed data from sources to destinations, but also have to filter and fuse observations to eliminate potentially irreleva...
Lina Peng, K. Selçuk Candan