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BMCBI
2010
95views more  BMCBI 2010»
13 years 10 months ago
An effective approach for identification of in vivo protein-DNA binding sites from paired-end ChIP-Seq data
Background: ChIP-Seq, which combines chromatin immunoprecipitation (ChIP) with high-throughput massively parallel sequencing, is increasingly being used for identification of prot...
Congmao Wang, Jie Xu, Dasheng Zhang, Zoe A. Wilson...
PASTE
2005
ACM
14 years 4 months ago
MonDe: safe updating through monitored deployment of new component versions
Safely updating software at remote sites is a cautious balance of enabling new functionality and avoiding adverse effects on existing functionality. A useful first step in this p...
Jonathan E. Cook, Alessandro Orso
TVCG
1998
197views more  TVCG 1998»
13 years 10 months ago
A New Line Integral Convolution Algorithm for Visualizing Time-Varying Flow Fields
—New challenges on vector field visualization emerge as time-dependent numerical simulations become ubiquitous in the field of computational fluid dynamics (CFD). To visualize da...
Han-Wei Shen, David L. Kao
BMCBI
2010
193views more  BMCBI 2010»
13 years 5 months ago
Mayday - integrative analytics for expression data
Background: DNA Microarrays have become the standard method for large scale analyses of gene expression and epigenomics. The increasing complexity and inherent noisiness of the ge...
Florian Battke, Stephan Symons, Kay Nieselt
ICDM
2008
IEEE
115views Data Mining» more  ICDM 2008»
14 years 4 months ago
Toward Faster Nonnegative Matrix Factorization: A New Algorithm and Comparisons
Nonnegative Matrix Factorization (NMF) is a dimension reduction method that has been widely used for various tasks including text mining, pattern analysis, clustering, and cancer ...
Jingu Kim, Haesun Park