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» Theoretical and Experimental DNA Computation
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FOCS
1995
IEEE
13 years 10 months ago
Reconstructing Strings from Substrings in Rounds
We establish a variety of combinatorial bounds on the tradeo s inherent in reconstructing strings using few rounds of a given number of substring queries per round. These results ...
Dimitris Margaritis, Steven Skiena
SOFTCO
2004
Springer
14 years 2 days ago
MultiNNProm: A Multi-Classifier System for Finding Genes
The computational identification of genes in DNA sequences has become an issue of crucial importance due to the large number of DNA molecules being currently sequenced. We present ...
Romesh Ranawana, Vasile Palade
PLDI
2006
ACM
14 years 20 days ago
An experimental analysis of self-adjusting computation
Dependence graphs and memoization can be used to efficiently update the output of a program as the input changes dynamically. Recent work has studied techniques for combining the...
Umut A. Acar, Guy E. Blelloch, Matthias Blume, Kan...
DNA
2003
Springer
101views Bioinformatics» more  DNA 2003»
13 years 12 months ago
A Lab-on-a-Chip Module for Bead Separation in DNA-Based Concept Learning
Affinity separation with magnetic beads is an important and widely used technique for DNA computing. We have designed and implemented an experimental lab-on-a-chip module for affin...
Hee-Woong Lim, Hae-Man Jang, Sung-Mo Ha, Young-Gyu...
PAMI
1998
87views more  PAMI 1998»
13 years 6 months ago
Learning Local Languages and Their Application to DNA Sequence Analysis
—This paper concerns an efficient algorithm for learning in the limit a special type of regular languages called strictly locally testable languages from positive data, and its a...
Takashi Yokomori, Satoshi Kobayashi