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SSS
2010
Springer
125views Control Systems» more  SSS 2010»
13 years 4 months ago
Systematic Correct Construction of Self-stabilizing Systems: A Case Study
Design and implementation of distributed algorithms often involve many subtleties due to their complex structure, non-determinism, and low atomicity as well as occurrence of unanti...
Ananda Basu, Borzoo Bonakdarpour, Marius Bozga, Jo...
DNA
2006
Springer
146views Bioinformatics» more  DNA 2006»
13 years 10 months ago
On Times to Compute Shapes in 2D Tile Self-assembly
We study the times to grow structures within the tile self-assembly model proposed by Winfree, and the possible shapes that can be achieved. Our earlier work was confined to the g...
Yuliy M. Baryshnikov, Edward G. Coffman Jr., Boons...
MSR
2006
ACM
14 years 16 days ago
Detecting similar Java classes using tree algorithms
Similarity analysis of source code is helpful during development to provide, for instance, better support for code reuse. Consider a development environment that analyzes code whi...
Tobias Sager, Abraham Bernstein, Martin Pinzger, C...
BMCBI
2005
127views more  BMCBI 2005»
13 years 6 months ago
Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns"
Background: The genomes of prokaryotes and lower eukaryotes display a very strong 11 bp periodic bias in the distribution of their nucleotides. This bias is present throughout a g...
Etienne Larsabal, Antoine Danchin
BMCBI
2006
130views more  BMCBI 2006»
13 years 6 months ago
An interactive visualization tool to explore the biophysical properties of amino acids and their contribution to substitution ma
Background: Quantitative descriptions of amino acid similarity, expressed as probabilistic models of evolutionary interchangeability, are central to many mainstream bioinformatic ...
Blazej Bulka, Marie desJardins, Stephen J. Freelan...