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JCB
2007
106views more  JCB 2007»
13 years 8 months ago
Clustered Sequence Representation for Fast Homology Search
We present a novel approach to managing redundancy in sequence databanks such as GenBank. We store clusters of near-identical sequences as a representative union-sequence and a se...
Michael Cameron, Yaniv Bernstein, Hugh E. Williams
CVPR
2009
IEEE
15 years 4 months ago
A Similarity Measure Between Vector Sequences with Application to Handwritten Word Image Retrieval
This article proposes a novel similarity measure between vector sequences. Recently, a model-based approach was introduced to address this issue. It consists in modeling each se...
José A. Rodríguez-Serrano, Florent P...
ACIVS
2006
Springer
13 years 11 months ago
A Real-Time Content Adaptation Framework for Exploiting ROI Scalability in H.264/AVC
In many application scenarios, the use of Regions of Interest (ROIs) within video sequences is a useful concept. It is shown in this paper how Flexible Macroblock Ordering (FMO), d...
Peter Lambert, Davy De Schrijver, Davy Van Deursen...
CIKM
2005
Springer
14 years 2 months ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
IPPS
2006
IEEE
14 years 2 months ago
Parallel multiple sequence alignment with local phylogeny search by simulated annealing
The problem of multiple sequence alignment is one of the most important problems in computational biology. In this paper we present a new method that simultaneously performs multi...
Jaroslaw Zola, Denis Trystram, Andrei Tchernykh, C...