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RECOMB
2005
Springer
14 years 9 months ago
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
Sing-Hoi Sze, Xiaoyan Zhao
TITB
2008
204views more  TITB 2008»
13 years 8 months ago
A Cryptographic Approach to Securely Share and Query Genomic Sequences
To support large-scale biomedical research projects, organizations need to share person-specific genomic sequences without violating the privacy of their data subjects. In the past...
Murat Kantarcioglu, Wei Jiang, Ying Liu, Bradley M...
IFIP
2004
Springer
14 years 2 months ago
Efficient Algorithms for Handling Molecular Weighted Sequences
Abstract In this paper we introduce the Weighted Suffix Tree, an efficient data structure for computing string regularities in weighted sequences of molecular data. Molecular Wei...
Costas S. Iliopoulos, Christos Makris, Yannis Pana...
ICPR
2010
IEEE
14 years 7 days ago
Spatial Representation for Efficient Sequence Classification
We present a general, simple feature representation of sequences that allows efficient inexact matching, comparison and classification of sequential data. This approach, recently ...
Pavel Kuksa, Vladimir Pavlovic
ISMB
1994
13 years 10 months ago
An Efficient Method for Multiple Sequence Alignment
Multiple sequence alignment has been a useful methodin the study of molecular evolution and sequence-structure relationships. This paper presents a newmethodfor multiple sequence ...
Jin Kim, Sakti Pramanik