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IPL
2008
95views more  IPL 2008»
13 years 10 months ago
Efficient algorithms for finding interleaving relationship between sequences
The longest common subsequence and sequence alignment problems have been studied extensively and they can be regarded as the relationship measurement between sequences. However, m...
Kuo-Si Huang, Chang-Biau Yang, Kuo-Tsung Tseng, Hs...
BMCBI
2004
125views more  BMCBI 2004»
13 years 10 months ago
A fast algorithm for determining the best combination of local alignments to a query sequence
Background: Existing sequence alignment algorithms assume that similarities between DNA or amino acid sequences are linearly ordered. That is, stretches of similar nucleotides or ...
Gavin C. Conant, Andreas Wagner
ICPP
2007
IEEE
14 years 4 months ago
Efficient Parallel Algorithm for Optimal Three-Sequences Alignment
Sequence alignment is a fundamental problem in the computational biology. Many alignment methods have been proposed in the literature, such as pair-wise sequence alignment (2SA), ...
Chun-Yuan Lin, Chen Tai Huang, Yeh-Ching Chung, Ch...
WABI
2007
Springer
139views Bioinformatics» more  WABI 2007»
14 years 4 months ago
Computability of Models for Sequence Assembly
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...
IPPS
2009
IEEE
14 years 4 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...