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BMCBI
2008
128views more  BMCBI 2008»
13 years 6 months ago
Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure
Background: Amino acid sequence probability distributions, or profiles, have been used successfully to predict secondary structure and local structure in proteins. Profile models ...
Christopher Bystroff, Bobbie-Jo M. Webb-Robertson
BMCBI
2008
118views more  BMCBI 2008»
13 years 6 months ago
DOVIS: an implementation for high-throughput virtual screening using AutoDock
Background: Molecular-docking-based virtual screening is an important tool in drug discovery that is used to significantly reduce the number of possible chemical compounds to be i...
Shuxing Zhang, Kamal Kumar, Xiaohui Jiang, Anders ...
BMCBI
2008
175views more  BMCBI 2008»
13 years 6 months ago
Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
Background: Protein-protein interactions are ubiquitous and essential for all cellular processes. High-resolution X-ray crystallographic structures of protein complexes can reveal...
Andrew J. Bordner, Andrey A. Gorin
BMCBI
2008
108views more  BMCBI 2008»
13 years 6 months ago
A nonparametric model for quality control of database search results in shotgun proteomics
Background: Analysis of complex samples with tandem mass spectrometry (MS/MS) has become routine in proteomic research. However, validation of database search results creates a bo...
Jiyang Zhang, Jianqi Li, Xin Liu, Hongwei Xie, Yun...
CORR
2008
Springer
116views Education» more  CORR 2008»
13 years 6 months ago
Learning to rank with combinatorial Hodge theory
Abstract. We propose a number of techniques for learning a global ranking from data that may be incomplete and imbalanced -- characteristics that are almost universal to modern dat...
Xiaoye Jiang, Lek-Heng Lim, Yuan Yao, Yinyu Ye