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ICPP
2006
IEEE
14 years 3 months ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal
IPPS
2006
IEEE
14 years 3 months ago
Power-aware data dissemination protocols in wireless sensor networks
Recent rapid technological developments have led to the development of tiny, low-power, low-cost sensors. Such devices integrate sensing, limited data processing and communication...
Sotiris E. Nikoletseas
IPPS
2006
IEEE
14 years 3 months ago
Placement and routing of Boolean functions in constrained FPGAs using a distributed genetic algorithm and local search
In this work we present a system for implementing the placement and routing stages in the FPGA cycle of design, into the physical design stage. We start with the ISCAS benchmarks,...
Manuel Rubio del Solar, Juan Manuel Sánchez...
IPPS
2006
IEEE
14 years 3 months ago
Automatically translating a general purpose C++ image processing library for GPUs
— This paper presents work-in-progress towards a C++ source-to-source translator that automatically seeks parallelisable code fragments and replaces them with code for a graphics...
Jay L. T. Cornwall, Olav Beckmann, Paul H. J. Kell...
IPPS
2006
IEEE
14 years 3 months ago
A study of MPI performance analysis tools on Blue Gene/L
Applications on todays massively parallel supercomputers rely on performance analysis tools to guide them toward scalable performance on thousands of processors. However, conventi...
I-Hsin Chung, Robert Walkup, Hui-Fang Wen, Hao Yu