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NAR
2002
125views more  NAR 2002»
13 years 7 months ago
ASTRAL compendium enhancements
The ASTRAL compendium provides several databases and tools to aid in the analysis of protein structures, particularly through the use of their sequences. It is partially derived f...
John-Marc Chandonia, Nigel S. Walker, Loredana Lo ...
BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
14 years 25 days ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu
NAR
1998
122views more  NAR 1998»
13 years 7 months ago
The PIR-International Protein Sequence Database
The Protein Information Resource (PIR; http://wwwnbrf.georgetown.edu/pir/ ) supports research on molecular evolution, functional genomics, and computational biology by maintaining...
Winona C. Barker, John S. Garavelli, Daniel H. Haf...
BMCBI
2005
105views more  BMCBI 2005»
13 years 7 months ago
Secondary structure assignment that accurately reflects physical and evolutionary characteristics
Background: Secondary structure is used in hierarchical classification of protein structures, identification of protein features, such as helix caps and loops, for fold recognitio...
Maria Vittoria Cubellis, Fabien Cailliez, Simon C....
AIIA
2005
Springer
14 years 1 months ago
Towards a General Framework for Substitutional Adaptation in Case-Based Reasoning
Abstract. Adaptation is one of the most problematic steps in the design and development of Case Based Reasoning (CBR) systems, as it may require considerable domain knowledge and i...
Sara Manzoni, Fabio Sartori, Giuseppe Vizzari