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SODA
2008
ACM
69views Algorithms» more  SODA 2008»
13 years 11 months ago
Trace reconstruction with constant deletion probability and related results
Thomas Holenstein, Michael Mitzenmacher, Rina Pani...
SODA
2004
ACM
111views Algorithms» more  SODA 2004»
13 years 11 months ago
Reconstructing strings from random traces
We are given a collection of m random subsequences (traces) of a string t of length n where each trace is obtained by deleting each bit in the string with probability q. Our goal ...
Tugkan Batu, Sampath Kannan, Sanjeev Khanna, Andre...
RECOMB
2002
Springer
14 years 10 months ago
Deconvolving sequence variation in mixed DNA populations
We present an original approach to identifying sequence variants in a mixed DNA population from sequence trace data. The heart of the method is based on parsimony: given a wildtyp...
Andy Wildenberg, Steven Skiena, Pavel Sumazin
CORR
2010
Springer
94views Education» more  CORR 2010»
13 years 7 months ago
The Stability of Low-Rank Matrix Reconstruction: a Constrained Singular Value View
The stability of low-rank matrix reconstruction is investigated in this paper. The -constrained minimal singular value ( -CMSV) of the measurement operator is shown to determine t...
Gongguo Tang, Arye Nehorai
STOC
2006
ACM
129views Algorithms» more  STOC 2006»
14 years 10 months ago
Optimal phylogenetic reconstruction
One of the major tasks of evolutionary biology is the reconstruction of phylogenetic trees from molecular data. The evolutionary model is given by a Markov chain on the true evolu...
Constantinos Daskalakis, Elchanan Mossel, Sé...