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FPL
2009
Springer
101views Hardware» more  FPL 2009»
14 years 1 months ago
An accelerator for K-TH nearest neighbor thinning based on the IMORC infrastructure
The creation and optimization of FPGA accelerators comprising several compute cores and memories are challenging tasks in high performance reconfigurable computing. In this paper...
Tobias Schumacher, Christian Plessl, Marco Platzne...
ERSA
2007
194views Hardware» more  ERSA 2007»
13 years 10 months ago
A Scalable and Reconfigurable Shared-Memory Graphics Cluster Architecture
Abstract: If the computational demands of an interactive graphics rendering application cannot be met by a single commodity Graphics Processing Unit (GPU), multiple graphics accele...
Ross Brennan, Michael Manzke, Keith O'Conor, John ...
BIBE
2007
IEEE
126views Bioinformatics» more  BIBE 2007»
13 years 10 months ago
FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data
In this paper we describe our design and characterization of a co-processor architecture to accelerate median-based phylogenetic reconstruction for generearrangement data. Our curr...
Jason D. Bakos, Panormitis E. Elenis, Jijun Tang
ASAP
2008
IEEE
186views Hardware» more  ASAP 2008»
14 years 3 months ago
Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs
RNA structure prediction, or folding, is a computeintensive task that lies at the core of several search applications in bioinformatics. We begin to address the need for high-thro...
Arpith C. Jacob, Jeremy Buhler, Roger D. Chamberla...
TVLSI
2008
90views more  TVLSI 2008»
13 years 8 months ago
A Special-Purpose Architecture for Solving the Breakpoint Median Problem
Abstract--In this paper, we describe the design for a co-processor for whole-genome phylogenetic reconstruction. Our current design performs a parallelized breakpoint median comput...
Jason D. Bakos, Panormitis E. Elenis