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AUSAI
2008
Springer
13 years 9 months ago
Propositionalisation of Profile Hidden Markov Models for Biological Sequence Analysis
Hidden Markov Models are a widely used generative model for analysing sequence data. A variant, Profile Hidden Markov Models are a special case used in Bioinformatics to represent,...
Stefan Mutter, Bernhard Pfahringer, Geoffrey Holme...
ICML
2001
IEEE
14 years 8 months ago
Conditional Random Fields: Probabilistic Models for Segmenting and Labeling Sequence Data
We present conditional random fields, a framework for building probabilistic models to segment and label sequence data. Conditional random fields offer several advantages over hid...
John D. Lafferty, Andrew McCallum, Fernando C. N. ...
DCC
2009
IEEE
14 years 8 months ago
An Implementable Scheme for Universal Lossy Compression of Discrete Markov Sources
We present a new lossy compressor for discrete sources. For coding a source sequence xn , the encoder starts by assigning a certain cost to each reconstruction sequence. It then f...
Shirin Jalali, Andrea Montanari, Tsachy Weissman
BMCBI
2006
92views more  BMCBI 2006»
13 years 7 months ago
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Background: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequen...
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, ...
ISLPED
1997
ACM
104views Hardware» more  ISLPED 1997»
13 years 11 months ago
Composite sequence compaction for finite-state machines using block entropy and high-order Markov models
- The objective of this paper is to provide an effective technique for accurate modeling of the external input sequences that affect the behavior of Finite State Machines (FSMs). B...
Radu Marculescu, Diana Marculescu, Massoud Pedram