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BMCBI
2010
121views more  BMCBI 2010»
13 years 7 months ago
Reconstructing genome trees of prokaryotes using overlapping genes
Background: Overlapping genes (OGs) are defined as adjacent genes whose coding sequences overlap partially or entirely. In fact, they are ubiquitous in microbial genomes and more ...
Chih-Hsien Cheng, Chung-Han Yang, Hsien-Tai Chiu, ...
ICML
2004
IEEE
14 years 8 months ago
Boosting margin based distance functions for clustering
The performance of graph based clustering methods critically depends on the quality of the distance function, used to compute similarities between pairs of neighboring nodes. In t...
Tomer Hertz, Aharon Bar-Hillel, Daphna Weinshall
RECOMB
2008
Springer
14 years 7 months ago
A Phylogenetic Approach to Genetic Map Refinement
Following various genetic mapping techniques conducted on different segregating populations, one or more genetic maps are obtained for a given species. However, recombination analy...
Denis Bertrand, Mathieu Blanchette, Nadia El-Mabro...
BMCBI
2008
139views more  BMCBI 2008»
13 years 7 months ago
A topological transformation in evolutionary tree search methods based on maximum likelihood combining p-ECR and neighbor joinin
Background: Inference of evolutionary trees using the maximum likelihood principle is NP-hard. Therefore, all practical methods rely on heuristics. The topological transformations...
Maozu Guo, Jian-Fu Li, Yang Liu
ACL
2010
13 years 5 months ago
Efficient Inference through Cascades of Weighted Tree Transducers
Weighted tree transducers have been proposed as useful formal models for representing syntactic natural language processing applications, but there has been little description of ...
Jonathan May, Kevin Knight, Heiko Vogler