: This article describes a method for solving the geometric closure problem for simplified models of nucleic acid structures by using the constant bond lengths approximation. The r...
In this paper we present a parallel algorithm that decides whether a graph G has treewidth at most two, and if so, construct a tree decomposition or path decomposition of minimum ...
Abstract. We present a direct algorithm that computes a largest common connected induced subgraph of two given graphs. It is based on an efficient generation of the common connecte...
We present an iterative approximate solution to the multidimensional assignment problem under general cost functions. The method maintains a feasible solution at every step, and i...
Graph-theoretic models have come to the forefront as some of the most powerful and practical methods for sequence assembly. Simultaneously, the computational hardness of the underl...
Paul Medvedev, Konstantinos Georgiou, Gene Myers, ...