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» Two Models for Gene Assembly in Ciliates
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DNA
2005
Springer
117views Bioinformatics» more  DNA 2005»
14 years 13 days ago
Simple Operations for Gene Assembly
Abstract. The intramolecular model for gene assembly in ciliates considers three operations, ld, hi, and dlad that can assemble any gene pattern through folding and recombination: ...
Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz ...
FUIN
2008
96views more  FUIN 2008»
13 years 7 months ago
Computational Efficiency of Intermolecular Gene Assembly
In this paper, we investigate the computational efficiency of gene rearrangement operations found in ciliates, a type of unicellular organisms. We show how the so-called guided re...
Tseren-Onolt Ishdorj, Remco Loos, Ion Petre
IANDC
2008
213views more  IANDC 2008»
13 years 7 months ago
Decision problem for shuffled genes
We consider a permutation-based model for the gene assembly process in ciliates. We give a procedure to decide whether a given micronuclear molecules may be assembled by using onl...
Ion Petre, Vladimir Rogojin
IJFCS
2007
109views more  IJFCS 2007»
13 years 6 months ago
Computational Power of intramolecular gene Assembly
The process of gene assembly in ciliates, an ancient group of organisms, is one of the most complex instances of DNA manipulation known in any organism. Three molecular operations...
Tseren-Onolt Ishdorj, Ion Petre, Vladimir Rogojin
TCS
2008
13 years 6 months ago
Sequential vs. parallel complexity in simple gene assembly
We investigate some differences between the general intramolecular model for gene assembly and its restricted simple model. Although both models satisfactorily sort all current ex...
Miika Langille, Ion Petre