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ALIFE
2007
13 years 9 months ago
Synchronization Phenomena in Surface-Reaction Models of Protocells
A class of generic models of protocells is introduced, which are inspired by the “Los Alamos bug” is but which, due to their abstraction level, can be applied to a wider set o...
Roberto Serra, Timoteo Carletti, Irene Poli
ALMOB
2007
74views more  ALMOB 2007»
13 years 9 months ago
Evaluating deterministic motif significance measures in protein databases
Background: Assessing the outcome of motif mining algorithms is an essential task, as the number of reported motifs can be very large. Significance measures play a central role in...
Pedro Gabriel Ferreira, Paulo J. Azevedo
BMCBI
2010
103views more  BMCBI 2010»
13 years 9 months ago
Detecting internally symmetric protein structures
Background: Many functional proteins have a symmetric structure. Most of these are multimeric complexes, which are made of non-symmetric monomers arranged in a symmetric manner. H...
Changhoon Kim, Jodi Basner, Byungkook Lee
BMCBI
2010
170views more  BMCBI 2010»
13 years 9 months ago
Integrative analysis of gene expression and copy number alterations using canonical correlation analysis
Background: With the rapid development of new genetic measurement methods, several types of genetic alterations can be quantified in a high-throughput manner. While the initial fo...
Charlotte Soneson, Henrik Lilljebjörn, Thoas ...
BMCBI
2010
189views more  BMCBI 2010»
13 years 9 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...