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BMCBI
2008
118views more  BMCBI 2008»
13 years 10 months ago
PseudoGeneQuest - Service for identification of different pseudogene types in the human genome
Background: Pseudogenes, nonfunctional copies of genes, evolve fast due the lack of evolutionary pressures and thus appear in several different forms. PseudoGeneQuest is an online...
Csaba P. Ortutay, Mauno Vihinen
SIGIR
2006
ACM
14 years 3 months ago
Type less, find more: fast autocompletion search with a succinct index
We consider the following full-text search autocompletion feature. Imagine a user of a search engine typing a query. Then with every letter being typed, we would like an instant d...
Holger Bast, Ingmar Weber
BMCBI
2010
157views more  BMCBI 2010»
13 years 10 months ago
SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read
Background: High-throughput automated sequencing has enabled an exponential growth rate of sequencing data. This requires increasing sequence quality and reliability in order to a...
Juan Falgueras, Antonio J. Lara, Noé Fern&a...
CMSB
2004
Springer
14 years 3 months ago
Beta Binders for Biological Interactions
This paper presents binders and operators, in the process calculi tradition, to reason about biological interactions. Special binders are added to wrap a process just as membranes ...
Corrado Priami, Paola Quaglia
EXTREME
2004
ACM
14 years 3 months ago
A Shallow Algorithm for Correcting Nesting Errors and Other Well-Formedness Violations in XML-like Input
We argue that there are some special situations where it can be useful to repair well-formedness violations occurring in XML-like input, giving examples from our own work. We anal...
Christian Siefkes