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» Unfolding of Microarray Data
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IJBRA
2007
89views more  IJBRA 2007»
13 years 7 months ago
Conservative adjustment of permutation p-values when the number of permutations is limited
The permutation procedure is widely used to assess the significance level (p-value) of a test statistic. This approach is asymptotically consistent. In genomics and proteomics st...
Yinglei Lai
BMCBI
2005
88views more  BMCBI 2005»
13 years 7 months ago
Using large-scale perturbations in gene network reconstruction
Background: Recent analysis of the yeast gene network shows that most genes have few inputs, indicating that enumerative gene reconstruction methods are both useful and computatio...
Thomas MacCarthy, Andrew Pomiankowski, Robert Seym...
AI
2010
Springer
13 years 2 months ago
Annotation Concept Synthesis and Enrichment Analysis
Annotation Enrichment Analysis (AEA) is a widely used analytical approach to process data generated by high-throughput genomic and proteomic experiments such as gene expression mic...
Mikhail Jiline, Stan Matwin, Marcel Turcotte
BMCBI
2011
13 years 2 months ago
Was the Scanner Calibration Slide Used for Its Intended Purpose?
In the article, Scanner calibration revisited, BMC Bioinformatics 2010, 11:361, Dr. Pozhitkov used the Scanner Calibration Slide, a key product of Full Moon BioSystems to generate...
Shannon Zhang, Yaping Zong
TVCG
2012
201views Hardware» more  TVCG 2012»
11 years 10 months ago
Exact and Approximate Area-Proportional Circular Venn and Euler Diagrams
— Scientists conducting microarray and other experiments use circular Venn and Euler diagrams to analyze and illustrate their results. As one solution to this problem, this artic...
Leland Wilkinson